PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00019165001
Common NameGSBRNA2T00019165001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 239aa    MW: 26009.1 Da    PI: 7.368
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00019165001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.11.3e-37151151100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC +dC++ pyf +eq +++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ 
  GSBRNA2T00019165001  15 PCGACKFLRRKCLSDCIFEPYFSSEQgAERFAAIHKVFGASNVSKLLLKVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFSLQQQVAY 104
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a++ ++k++
  GSBRNA2T00019165001 105 LQAQVMQMKAH 115
                          ****9988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.20514116IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-3715113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MATSGNITTA GTGSPCGACK FLRRKCLSDC IFEPYFSSEQ GAERFAAIHK VFGASNVSKL  60
LLKVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFSLQQ QVAYLQAQVM QMKAHIAGHK  120
TSAAEGTHQF TTWQQTSGSP IDSAYSTPYN HHHHTYYGHI NPNNPVSPQS SLEESFSITS  180
SDVTTTANVR ETHQTGGGVY GQGELGFQEG YPNKKRSVSY CDSDLGELQA LALRMMKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00019165001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411040.0AC241104.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133536.11e-180PREDICTED: LOB domain-containing protein 16-like
RefseqXP_013724346.11e-180PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB71e-153LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A078GBZ90.0A0A078GBZ9_BRANA; BnaC03g23720D protein
STRINGBra000257.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-133lateral organ boundaries-domain 16
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]